J3_7QGR_005

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGR_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0685

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

7QGR|1|0|C|936
7QGR|1|0|A|937
7QGR|1|0|A|938
7QGR|1|0|G|939
*
7QGR|1|0|C|1344
7QGR|1|0|U|1345
7QGR|1|0|A|1346
7QGR|1|0|G|1347
7QGR|1|0|U|1348
7QGR|1|0|A|1349
7QGR|1|0|A|1350
*
7QGR|1|0|U|1372
7QGR|1|0|G|1373
7QGR|1|0|A|1374
7QGR|1|0|A|1375
7QGR|1|0|U|1376
7QGR|1|0|A|1377
7QGR|1|0|C|1378
7QGR|1|0|G|1379

Current chains

Chain 0

16S rRNA

Nearby chains

Chain 6

30S ribosomal protein S7

Chain 8

30S ribosomal protein S9