J3_7QGR_014

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGR_014 not in the Motif Atlas

Homologous match to J3_5J7L_036

Geometric discrepancy: 0.0771

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7QGR|1|N|G|30
7QGR|1|N|C|31
*
7QGR|1|N|G|474
7QGR|1|N|C|475
7QGR|1|N|G|476
7QGR|1|N|A|477
7QGR|1|N|A|478
7QGR|1|N|A|479
7QGR|1|N|A|480
7QGR|1|N|G|481
*
7QGR|1|N|C|509
7QGR|1|N|C|510

Current chains

Chain N

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L20

Chain h

50S ribosomal protein L24