J3_7QGR_018

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGR_018 not in the Motif Atlas

Homologous match to J3_8VTW_003

Geometric discrepancy: 0.4206

The information below is about J3_8VTW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QGR|1|N|G|1055
7QGR|1|N|G|1056
7QGR|1|N|A|1057
*
7QGR|1|N|U|1081
7QGR|1|N|U|1082
7QGR|1|N|U|1083
7QGR|1|N|A|1084
7QGR|1|N|A|1085
7QGR|1|N|A|1086
7QGR|1|N|G|1087
*
7QGR|1|N|C|1102
7QGR|1|N|A|1103
7QGR|1|N|C|1104

Current chains

Chain N

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L11

Chain r

50S ribosomal protein L36