J3_7QGR_020

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7QGR|1|N|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGR_020 not in the Motif Atlas

Homologous match to J3_8VTW_005

Geometric discrepancy: 0.1641

The information below is about J3_8VTW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44702.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7QGR|1|N|C|1306
7QGR|1|N|A|1307
7QGR|1|N|A|1308
7QGR|1|N|G|1309
*
7QGR|1|N|C|1605
7QGR|1|N|C|1606
7QGR|1|N|C|1607
7QGR|1|N|A|1608
7QGR|1|N|A|1609
7QGR|1|N|A|1610
7QGR|1|N|C|1611
*
7QGR|1|N|G|1620
7QGR|1|N|U|1621
7QGR|1|N|G|1622

Current chains

Chain N

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L34