J3_7QGU_017

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

UG*CACCAGUGG*CGA

Length

14 nucleotides

Bulged bases

7QGU|1|W|U|732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QGU_017 not in the Motif Atlas

Homologous match to J3_5J7L_003

Geometric discrepancy: 0.1606

The information below is about J3_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11934.4

Basepair signature

cWW-cWW-tWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7QGU|1|W|U|681
7QGU|1|W|G|682
*
7QGU|1|W|C|726
7QGU|1|W|A|727
7QGU|1|W|C|728
7QGU|1|W|C|729
7QGU|1|W|A|730
7QGU|1|W|G|731
7QGU|1|W|U|732
7QGU|1|W|G|733
7QGU|1|W|G|734
*
7QGU|1|W|C|741
7QGU|1|W|G|742
7QGU|1|W|A|743

Current chains

Chain W

16S rRNA

Nearby chains

Chain k

30S ribosomal protein S6

Chain p

30S ribosomal protein S11

Chain w

30S ribosomal protein S18