J3_7QIW_001
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CAGCCUUAGAA*UAGUCUGGAG*CUACG
- Length
- 26 nucleotides
- Bulged bases
- 7QIW|1|2|A|118, 7QIW|1|2|G|119, 7QIW|1|2|G|154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIW_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.3616
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7QIW|1|2|C|111
7QIW|1|2|A|112
7QIW|1|2|G|113
7QIW|1|2|C|114
7QIW|1|2|C|115
7QIW|1|2|U|116
7QIW|1|2|U|117
7QIW|1|2|A|118
7QIW|1|2|G|119
7QIW|1|2|A|120
7QIW|1|2|A|121
*
7QIW|1|2|U|147
7QIW|1|2|A|148
7QIW|1|2|G|149
7QIW|1|2|U|150
7QIW|1|2|C|151
7QIW|1|2|U|152
7QIW|1|2|G|153
7QIW|1|2|G|154
7QIW|1|2|A|155
7QIW|1|2|G|156
*
7QIW|1|2|C|260
7QIW|1|2|U|261
7QIW|1|2|A|262
7QIW|1|2|C|263
7QIW|1|2|G|264
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain J
- Ribosomal_L7Ae domain-containing protein
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain j
- Similar to 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L36
Coloring options: