J3_7QIW_019
3D structure
- PDB id
- 7QIW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.35 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7QIW|1|2|U|340, 7QIW|1|2|A|348, 7QIW|1|8|C|28
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIW_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0458
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7QIW|1|2|C|337
7QIW|1|2|G|338
7QIW|1|2|A|339
7QIW|1|2|U|340
7QIW|1|2|A|341
7QIW|1|2|G|342
7QIW|1|2|C|343
7QIW|1|2|G|344
7QIW|1|2|A|345
7QIW|1|2|A|346
7QIW|1|2|C|347
7QIW|1|2|A|348
7QIW|1|2|A|349
7QIW|1|2|G|350
7QIW|1|2|U|351
7QIW|1|2|A|352
7QIW|1|2|C|353
*
7QIW|1|2|G|360
7QIW|1|2|G|361
7QIW|1|2|A|362
7QIW|1|2|A|363
7QIW|1|2|A|364
7QIW|1|2|G|365
*
7QIW|1|8|C|26
7QIW|1|8|U|27
7QIW|1|8|C|28
7QIW|1|8|G|29
Current chains
- Chain 2
- 25S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain a
- KOW domain-containing protein
- Chain l
- Ribosomal protein L37
- Chain n
- 60S ribosomal protein eL39
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