J3_7QIW_020

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AUG(A2M)AAAGGAC*GAGUCAAAGAGU(OMG)CU*AU

Length

28 nucleotides

Bulged bases

7QIW|1|2|G|395, 7QIW|1|2|OMG|399

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIW_020 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.3035

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

7QIW|1|2|A|366
7QIW|1|2|U|367
7QIW|1|2|G|368
7QIW|1|2|A2M|369
7QIW|1|2|A|370
7QIW|1|2|A|371
7QIW|1|2|A|372
7QIW|1|2|G|373
7QIW|1|2|G|374
7QIW|1|2|A|375
7QIW|1|2|C|376
*
7QIW|1|2|G|387
7QIW|1|2|A|388
7QIW|1|2|G|389
7QIW|1|2|U|390
7QIW|1|2|C|391
7QIW|1|2|A|392
7QIW|1|2|A|393
7QIW|1|2|A|394
7QIW|1|2|G|395
7QIW|1|2|A|396
7QIW|1|2|G|397
7QIW|1|2|U|398
7QIW|1|2|OMG|399
7QIW|1|2|C|400
7QIW|1|2|U|401
*
7QIW|1|8|A|24
7QIW|1|8|U|25

Current chains

Chain 2

25S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain R

50S ribosomal protein L22, chloroplastic

Chain a

KOW domain-containing protein

Chain n

60S ribosomal protein eL39