J3_7QIW_025

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIW_025 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.086

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7QIW|1|2|A|1658
7QIW|1|2|G|1659
7QIW|1|2|A|1660
7QIW|1|2|C|1661
7QIW|1|2|G|1662
*
7QIW|1|2|C|1797
7QIW|1|2|C|1798
*
7QIW|1|2|G|1802
7QIW|1|2|A|1803
7QIW|1|2|A|1804
7QIW|1|2|A|1805
7QIW|1|2|A|1806
7QIW|1|2|U|1807

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain i

60S ribosomal protein eL34

Chain q

60S ribosomal protein eL43