J3_7QIZ_001
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAGCCUUAGAA*UAGUCUGGAG*CUACG
- Length
- 26 nucleotides
- Bulged bases
- 7QIZ|1|2|A|118, 7QIZ|1|2|G|119, 7QIZ|1|2|G|154
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.3615
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|2|C|111
7QIZ|1|2|A|112
7QIZ|1|2|G|113
7QIZ|1|2|C|114
7QIZ|1|2|C|115
7QIZ|1|2|U|116
7QIZ|1|2|U|117
7QIZ|1|2|A|118
7QIZ|1|2|G|119
7QIZ|1|2|A|120
7QIZ|1|2|A|121
*
7QIZ|1|2|U|147
7QIZ|1|2|A|148
7QIZ|1|2|G|149
7QIZ|1|2|U|150
7QIZ|1|2|C|151
7QIZ|1|2|U|152
7QIZ|1|2|G|153
7QIZ|1|2|G|154
7QIZ|1|2|A|155
7QIZ|1|2|G|156
*
7QIZ|1|2|C|260
7QIZ|1|2|U|261
7QIZ|1|2|A|262
7QIZ|1|2|C|263
7QIZ|1|2|G|264
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain J
- Ribosomal_L7Ae domain-containing protein
- Chain N
- 60S ribosomal protein L13
- Chain P
- Ribosomal protein L15
- Chain j
- Similar to 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L36
Coloring options: