J3_7QIZ_007
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CGG*CGCAG*UCUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_007 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1496
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7QIZ|1|2|C|839
7QIZ|1|2|G|840
7QIZ|1|2|G|841
*
7QIZ|1|2|C|873
7QIZ|1|2|G|874
7QIZ|1|2|C|875
7QIZ|1|2|A|876
7QIZ|1|2|G|877
*
7QIZ|1|2|U|902
7QIZ|1|2|C|903
7QIZ|1|2|U|904
7QIZ|1|2|G|905
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L8
- Chain T
- Ribosomal protein L19
- Chain i
- 60S ribosomal protein eL34
- Chain q
- 60S ribosomal protein eL43
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