J3_7QIZ_008

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAAGAG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7QIZ|1|2|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIZ_008 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1068

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7QIZ|1|2|C|1490
7QIZ|1|2|G|1491
7QIZ|1|2|A|1492
7QIZ|1|2|A|1493
7QIZ|1|2|G|1494
7QIZ|1|2|A|1495
7QIZ|1|2|G|1496
*
7QIZ|1|2|C|1863
7QIZ|1|2|A|1864
7QIZ|1|2|A|1865
*
7QIZ|1|2|U|1877
7QIZ|1|2|C|1878
7QIZ|1|2|U|1879
7QIZ|1|2|G|1880

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain i

60S ribosomal protein eL34