J3_7QIZ_013
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7QIZ|1|2|A|2707
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_013 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.0945
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7QIZ|1|2|C|2668
7QIZ|1|2|U|2669
7QIZ|1|2|C|2670
*
7QIZ|1|2|G|2694
7QIZ|1|2|A|2695
7QIZ|1|2|A|2696
*
7QIZ|1|2|U|2705
7QIZ|1|2|A|2706
7QIZ|1|2|A|2707
7QIZ|1|2|A|2708
7QIZ|1|2|A|2709
7QIZ|1|2|G|2710
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain 5
- 5S ribosomal RNA; 5S rRNA
- Chain G
- Ribosomal_L18_c domain-containing protein
- Chain M
- 60S ribosomal protein uL5
- Chain V
- 60S ribosomal protein eL21
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