J3_7QIZ_021
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCA*UUAUG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|1096
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_021 not in the Motif Atlas
- Geometric match to J3_4V88_034
- Geometric discrepancy: 0.372
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QIZ|1|S2|C|1040
7QIZ|1|S2|C|1041
7QIZ|1|S2|A|1042
*
7QIZ|1|S2|U|1082
7QIZ|1|S2|U|1083
7QIZ|1|S2|A|1084
7QIZ|1|S2|U|1085
7QIZ|1|S2|G|1086
*
7QIZ|1|S2|C|1093
7QIZ|1|S2|A|1094
7QIZ|1|S2|A|1095
7QIZ|1|S2|A|1096
7QIZ|1|S2|G|1097
Current chains
- Chain S2
- 18S
Nearby chains
- Chain BA
- 40S ribosomal protein S21
- Chain DA
- 40S ribosomal protein S26
- Chain JA
- 40S ribosomal protein S15a-1
- Chain LA
- 40S ribosomal protein S27
- Chain u
- 40S ribosomal protein SA
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