J3_7QIZ_022
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGACUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_022 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1073
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|C|1164
7QIZ|1|S2|C|1165
7QIZ|1|S2|A|1166
7QIZ|1|S2|G|1167
*
7QIZ|1|S2|C|1587
7QIZ|1|S2|U|1588
7QIZ|1|S2|A|1589
7QIZ|1|S2|G|1590
7QIZ|1|S2|U|1591
7QIZ|1|S2|A|1592
7QIZ|1|S2|A|1593
*
7QIZ|1|S2|U|1615
7QIZ|1|S2|G|1616
7QIZ|1|S2|A|1617
7QIZ|1|S2|C|1618
7QIZ|1|S2|U|1619
7QIZ|1|S2|A|1620
7QIZ|1|S2|C|1621
7QIZ|1|S2|G|1622
Current chains
- Chain S2
- 18S
Nearby chains
- Chain OA
- Ribosomal_S7 domain-containing protein
- Chain RA
- 40S ribosomal protein uS9
- Chain WA
- 40S ribosomal protein eS28
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