J3_7QIZ_027

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UG*UG(PSU)C*GUUAA

Length

11 nucleotides

Bulged bases

7QIZ|1|S2|A|1324

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIZ_027 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.2218

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7QIZ|1|S2|U|1296
7QIZ|1|S2|G|1297
*
7QIZ|1|S2|U|1306
7QIZ|1|S2|G|1307
7QIZ|1|S2|PSU|1308
7QIZ|1|S2|C|1309
*
7QIZ|1|S2|G|1321
7QIZ|1|S2|U|1322
7QIZ|1|S2|U|1323
7QIZ|1|S2|A|1324
7QIZ|1|S2|A|1325

Current chains

Chain S2

18S

Nearby chains

Chain AA

40S ribosomal protein S17

Chain EA

S5 DRBM domain-containing protein

Chain u

40S ribosomal protein SA