J3_7QIZ_028
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 7QIZ|1|S2|U|1418, 7QIZ|1|S2|U|1419
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_028 not in the Motif Atlas
- Homologous match to J3_8C3A_043
- Geometric discrepancy: 0.1664
- The information below is about J3_8C3A_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.3
- Basepair signature
- cWW-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
7QIZ|1|S2|A|1339
7QIZ|1|S2|G|1340
7QIZ|1|S2|C|1341
*
7QIZ|1|S2|G|1391
7QIZ|1|S2|G|1392
7QIZ|1|S2|A|1393
7QIZ|1|S2|C|1394
*
7QIZ|1|S2|G|1417
7QIZ|1|S2|U|1418
7QIZ|1|S2|U|1419
7QIZ|1|S2|U|1420
Current chains
- Chain S2
- 18S
Nearby chains
- Chain AA
- 40S ribosomal protein S17
- Chain OA
- Ribosomal_S7 domain-containing protein
- Chain RA
- 40S ribosomal protein uS9
- Chain VA
- Ribosomal_S10 domain-containing protein
- Chain XA
- 40S ribosomal protein uS14
- Chain YA
- Mitogen-activated protein kinase
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