J3_7QIZ_033
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AUG(A2M)AAAGGAC*GAGUCAAAGAGU(OMG)CU*AU
- Length
- 28 nucleotides
- Bulged bases
- 7QIZ|1|2|G|395, 7QIZ|1|2|OMG|399
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_033 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.3044
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7QIZ|1|2|A|366
7QIZ|1|2|U|367
7QIZ|1|2|G|368
7QIZ|1|2|A2M|369
7QIZ|1|2|A|370
7QIZ|1|2|A|371
7QIZ|1|2|A|372
7QIZ|1|2|G|373
7QIZ|1|2|G|374
7QIZ|1|2|A|375
7QIZ|1|2|C|376
*
7QIZ|1|2|G|387
7QIZ|1|2|A|388
7QIZ|1|2|G|389
7QIZ|1|2|U|390
7QIZ|1|2|C|391
7QIZ|1|2|A|392
7QIZ|1|2|A|393
7QIZ|1|2|A|394
7QIZ|1|2|G|395
7QIZ|1|2|A|396
7QIZ|1|2|G|397
7QIZ|1|2|U|398
7QIZ|1|2|OMG|399
7QIZ|1|2|C|400
7QIZ|1|2|U|401
*
7QIZ|1|8|A|24
7QIZ|1|8|U|25
Current chains
- Chain 2
- 25S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain R
- 50S ribosomal protein L22, chloroplastic
- Chain a
- KOW domain-containing protein
- Chain n
- 60S ribosomal protein eL39
Coloring options: