J3_7QIZ_038

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QIZ_038 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.086

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

7QIZ|1|2|A|1658
7QIZ|1|2|G|1659
7QIZ|1|2|A|1660
7QIZ|1|2|C|1661
7QIZ|1|2|G|1662
*
7QIZ|1|2|C|1797
7QIZ|1|2|C|1798
*
7QIZ|1|2|G|1802
7QIZ|1|2|A|1803
7QIZ|1|2|A|1804
7QIZ|1|2|A|1805
7QIZ|1|2|A|1806
7QIZ|1|2|U|1807

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain i

60S ribosomal protein eL34

Chain q

60S ribosomal protein eL43