J3_7QIZ_040
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- (OMG)UC*GCCUAACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 7QIZ|1|2|C|2764, 7QIZ|1|2|U|2801
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_040 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0608
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|2|OMG|2655
7QIZ|1|2|U|2656
7QIZ|1|2|C|2657
*
7QIZ|1|2|G|2758
7QIZ|1|2|C|2759
7QIZ|1|2|C|2760
7QIZ|1|2|U|2761
7QIZ|1|2|A|2762
7QIZ|1|2|A|2763
7QIZ|1|2|C|2764
7QIZ|1|2|G|2765
7QIZ|1|2|A|2766
7QIZ|1|2|U|2767
7QIZ|1|2|C|2768
7QIZ|1|2|C|2769
*
7QIZ|1|2|OMG|2797
7QIZ|1|2|G|2798
7QIZ|1|2|U|2799
7QIZ|1|2|G|2800
7QIZ|1|2|U|2801
7QIZ|1|2|C|2802
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain V
- 60S ribosomal protein eL21
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain p
- 60S ribosomal protein eL42
- Chain s
- tRNA
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