J3_7QIZ_045
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*(A2M)GU
- Length
- 20 nucleotides
- Bulged bases
- 7QIZ|1|S2|A|47
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QIZ_045 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0687
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7QIZ|1|S2|A|41
7QIZ|1|S2|G|42
7QIZ|1|S2|A|43
7QIZ|1|S2|U|44
7QIZ|1|S2|U|45
7QIZ|1|S2|A|46
7QIZ|1|S2|A|47
7QIZ|1|S2|G|48
*
7QIZ|1|S2|C|435
7QIZ|1|S2|G|436
7QIZ|1|S2|C|437
7QIZ|1|S2|G|438
7QIZ|1|S2|C|439
7QIZ|1|S2|A2M|440
7QIZ|1|S2|A|441
7QIZ|1|S2|A|442
7QIZ|1|S2|U|443
*
7QIZ|1|S2|A2M|468
7QIZ|1|S2|G|469
7QIZ|1|S2|U|470
Current chains
- Chain S2
- 18S
Nearby chains
- Chain CA
- 40S body ribosomal protein uS12
- Chain GA
- 40S body ribosomal protein uS4
- Chain y
- 40S ribosomal protein S8
Coloring options: