J3_7QP6_001

3D structure

PDB id

7QP6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in open state (h48S AUG open)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

7QP6|1|A|C|483

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QP6_001 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.0793

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7QP6|1|A|A|40
7QP6|1|A|G|41
*
7QP6|1|A|C|481
7QP6|1|A|G|482
7QP6|1|A|C|483
7QP6|1|A|A2M|484
7QP6|1|A|A|485
7QP6|1|A|A|486
7QP6|1|A|U|487
*
7QP6|1|A|A|512
7QP6|1|A|G|513
7QP6|1|A|U|514

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23