J3_7QQ3_005

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QQ3_005 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.2258

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7QQ3|1|I|G|1055
7QQ3|1|I|G|1056
7QQ3|1|I|A|1057
*
7QQ3|1|I|U|1081
7QQ3|1|I|U|1082
7QQ3|1|I|U|1083
7QQ3|1|I|A|1084
7QQ3|1|I|A|1085
7QQ3|1|I|A|1086
7QQ3|1|I|G|1087
*
7QQ3|1|I|C|1102
7QQ3|1|I|A|1103
7QQ3|1|I|C|1104

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L36