J3_7QQ3_014
3D structure
- PDB id
- 7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GCAGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 7QQ3|1|J|U|14, 7QQ3|1|J|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QQ3_014 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.2455
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
7QQ3|1|J|G|10
7QQ3|1|J|C|11
7QQ3|1|J|A|12
7QQ3|1|J|G|13
7QQ3|1|J|U|14
7QQ3|1|J|A|15
7QQ3|1|J|G|16
*
7QQ3|1|J|C|68
7QQ3|1|J|G|69
7QQ3|1|J|C|70
*
7QQ3|1|J|G|106
7QQ3|1|J|G|107
7QQ3|1|J|A|108
7QQ3|1|J|A|109
7QQ3|1|J|C|110
Current chains
- Chain J
- 5S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- 50S ribosomal protein L18
- Chain d
- 50S ribosomal protein L25
- Chain e
- 50S ribosomal protein L27
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