J3_7QQ3_015
3D structure
- PDB id
- 7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 7QQ3|1|I|A|504, 7QQ3|1|I|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QQ3_015 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1053
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
7QQ3|1|I|G|30
7QQ3|1|I|C|31
*
7QQ3|1|I|G|474
7QQ3|1|I|C|475
7QQ3|1|I|G|476
7QQ3|1|I|A|477
7QQ3|1|I|A|478
7QQ3|1|I|A|479
7QQ3|1|I|A|480
7QQ3|1|I|G|481
7QQ3|1|I|A|482
7QQ3|1|I|A|483
7QQ3|1|I|C|484
*
7QQ3|1|I|G|496
7QQ3|1|I|A|497
7QQ3|1|I|G|498
7QQ3|1|I|U|499
7QQ3|1|I|G|500
7QQ3|1|I|A|501
7QQ3|1|I|A|502
7QQ3|1|I|A|503
7QQ3|1|I|A|504
7QQ3|1|I|A|505
7QQ3|1|I|G|506
7QQ3|1|I|A|507
7QQ3|1|I|A|508
7QQ3|1|I|C|509
7QQ3|1|I|C|510
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L20
- Chain a
- 50S ribosomal protein L22
- Chain c
- 50S ribosomal protein L24
Coloring options: