J3_7QQ3_019

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QQ3_019 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0672

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7QQ3|1|I|G|1424
7QQ3|1|I|G|1425
7QQ3|1|I|G|1426
7QQ3|1|I|A|1427
7QQ3|1|I|C|1428
7QQ3|1|I|G|1429
*
7QQ3|1|I|C|1564
7QQ3|1|I|C|1565
*
7QQ3|1|I|G|1568
7QQ3|1|I|A|1569
7QQ3|1|I|A|1570
7QQ3|1|I|A|1571
7QQ3|1|I|A|1572
7QQ3|1|I|G|1573
7QQ3|1|I|C|1574

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2