J3_7QVP_001
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CA*UUGAAAAG*CG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_001 not in the Motif Atlas
- Geometric match to J3_5J7L_036
- Geometric discrepancy: 0.0933
- The information below is about J3_5J7L_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_60031.2
- Basepair signature
- cWW-cWW-cWW-tWH-tSH-F-F
- Number of instances in this motif group
- 7
Unit IDs
7QVP|1|L1|C|19
7QVP|1|L1|A|20
*
7QVP|1|L6|U|380
7QVP|1|L6|U|381
7QVP|1|L6|G|382
7QVP|1|L6|A|383
7QVP|1|L6|A|384
7QVP|1|L6|A|385
7QVP|1|L6|A|386
7QVP|1|L6|G|387
*
7QVP|1|L6|C|414
7QVP|1|L6|G|415
Current chains
- Chain L1
- 5.8S ribosomal RNA
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain MC
- 60S ribosomal protein L4
- Chain MY
- KOW domain-containing protein
- Chain Ml
- 60S ribosomal protein L39
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