J3_7QVP_010

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L5|A|2551
7QVP|1|L5|G|2552
7QVP|1|L5|A|2553
7QVP|1|L5|U|2554
7QVP|1|L5|G|2555
*
7QVP|1|L5|C|2572
7QVP|1|L5|A|2573
7QVP|1|L5|G|2574
7QVP|1|L5|U|2575
*
7QVP|1|L5|A|2757
7QVP|1|L5|G|2758
7QVP|1|L5|G|2759
7QVP|1|L5|G|2760
7QVP|1|L5|U|2761
7QVP|1|L5|G|2762
7QVP|1|L5|U|2763
7QVP|1|L5|A|2764
7QVP|1|L5|A|2765
7QVP|1|L5|A|2766
7QVP|1|L5|U|2767

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LZ

60S ribosomal protein L27