J3_7QVP_016

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7QVP|1|L6|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L6|C|112
7QVP|1|L6|A|113
7QVP|1|L6|G|114
7QVP|1|L6|C|115
7QVP|1|L6|G|116
*
7QVP|1|L6|C|155
7QVP|1|L6|G|156
7QVP|1|L6|U|157
7QVP|1|L6|A|158
7QVP|1|L6|C|159
7QVP|1|L6|G|160
*
7QVP|1|L6|C|275
7QVP|1|L6|C|276
7QVP|1|L6|G|277
7QVP|1|L6|G|278

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MG

60S ribosomal protein L7a

Chain ML

60S ribosomal protein L13

Chain MN

60S ribosomal protein L15

Chain Mh

60S ribosomal protein L35

Chain Mi

60S ribosomal protein L36