J3_7QVP_019

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGUAG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QVP_019 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1722

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7QVP|1|L6|C|1546
7QVP|1|L6|A|1547
7QVP|1|L6|G|1548
*
7QVP|1|L6|C|1580
7QVP|1|L6|G|1581
7QVP|1|L6|U|1582
7QVP|1|L6|A|1583
7QVP|1|L6|G|1584
*
7QVP|1|L6|U|1609
7QVP|1|L6|C|1610
7QVP|1|L6|C|1611
7QVP|1|L6|G|1612

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MA

60S ribosomal protein L8

Chain MR

60S ribosomal protein L19

Chain Mp

60S ribosomal protein L37a