J3_7QVP_020

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

7QVP|1|L6|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QVP_020 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0859

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7QVP|1|L6|C|2393
7QVP|1|L6|G|2394
7QVP|1|L6|A|2395
7QVP|1|L6|A|2396
7QVP|1|L6|G|2397
7QVP|1|L6|U|2398
7QVP|1|L6|G|2399
*
7QVP|1|L6|C|2805
7QVP|1|L6|A|2806
7QVP|1|L6|A|2807
*
7QVP|1|L6|U|2819
7QVP|1|L6|C|2820
7QVP|1|L6|U|2821
7QVP|1|L6|G|2822

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain MR

60S ribosomal protein L19

Chain Mg

60S ribosomal protein L34