J3_7QVP_047

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QVP_047 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1273

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7QVP|1|S3|A|40
7QVP|1|S3|G|41
*
7QVP|1|S3|C|481
7QVP|1|S3|G|482
7QVP|1|S3|C|483
7QVP|1|S3|A|484
7QVP|1|S3|A|485
7QVP|1|S3|A|486
7QVP|1|S3|U|487
*
7QVP|1|S3|A|512
7QVP|1|S3|G|513
7QVP|1|S3|U|514

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RJ

40S ribosomal protein S9

Chain RX

40S ribosomal protein S23