J3_7QVP_052
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_052 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.128
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7QVP|1|S3|C|1218
7QVP|1|S3|C|1219
7QVP|1|S3|A|1220
7QVP|1|S3|G|1221
*
7QVP|1|S3|C|1645
7QVP|1|S3|C|1646
7QVP|1|S3|A|1647
7QVP|1|S3|G|1648
7QVP|1|S3|U|1649
7QVP|1|S3|A|1650
7QVP|1|S3|A|1651
*
7QVP|1|S3|U|1673
7QVP|1|S3|G|1674
7QVP|1|S3|A|1675
7QVP|1|S3|U|1676
7QVP|1|S3|U|1677
7QVP|1|S3|A|1678
7QVP|1|S3|A|1679
7QVP|1|S3|G|1680
Current chains
- Chain S3
- 18S ribosomal RNA
Nearby chains
- Chain RF
- 40S ribosomal protein S5
- Chain RQ
- 40S ribosomal protein S16
- Chain Rc
- 40S ribosomal protein S28
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