J3_7QVP_078
3D structure
- PDB id
- 7QVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human collided disome (di-ribosome) stalled on XBP1 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCCUCACGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 7QVP|1|L6|C|4337, 7QVP|1|L6|U|4374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7QVP_078 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0843
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7QVP|1|L6|G|4228
7QVP|1|L6|U|4229
7QVP|1|L6|C|4230
*
7QVP|1|L6|G|4331
7QVP|1|L6|C|4332
7QVP|1|L6|C|4333
7QVP|1|L6|U|4334
7QVP|1|L6|C|4335
7QVP|1|L6|A|4336
7QVP|1|L6|C|4337
7QVP|1|L6|G|4338
7QVP|1|L6|A|4339
7QVP|1|L6|U|4340
7QVP|1|L6|C|4341
7QVP|1|L6|C|4342
*
7QVP|1|L6|G|4370
7QVP|1|L6|G|4371
7QVP|1|L6|U|4372
7QVP|1|L6|G|4373
7QVP|1|L6|U|4374
7QVP|1|L6|C|4375
Current chains
- Chain L6
- 28S ribosomal RNA
Nearby chains
- Chain B5
- Transfer RNA; tRNA
- Chain MQ
- 60S ribosomal protein L18
- Chain MT
- 60S ribosomal protein L21
- Chain Ma
- 60S ribosomal protein L27a
- Chain Mo
- 60S ribosomal protein L36a
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