J3_7QVP_079

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7QVP|1|L6|U|4882, 7QVP|1|L6|A|4938, 7QVP|1|L6|C|4940, 7QVP|1|L6|A|4943, 7QVP|1|L6|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QVP|1|L6|G|4751
7QVP|1|L6|U|4752
7QVP|1|L6|U|4753
7QVP|1|L6|G|4754
*
7QVP|1|L6|C|4879
7QVP|1|L6|C|4880
7QVP|1|L6|U|4881
7QVP|1|L6|U|4882
7QVP|1|L6|C|4883
*
7QVP|1|L6|G|4936
7QVP|1|L6|C|4937
7QVP|1|L6|A|4938
7QVP|1|L6|C|4939
7QVP|1|L6|C|4940
7QVP|1|L6|G|4941
7QVP|1|L6|C|4942
7QVP|1|L6|A|4943
7QVP|1|L6|C|4944
7QVP|1|L6|G|4945
7QVP|1|L6|U|4946
7QVP|1|L6|U|4947
7QVP|1|L6|C|4948

Current chains

Chain L6

28S ribosomal RNA

Nearby chains

Chain ME

60S ribosomal protein L6

Chain MM

60S ribosomal protein L14

Chain MO

60S ribosomal protein L13a

Chain Mf

60S ribosomal protein L35a