J3_7QVP_083

3D structure

PDB id

7QVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human collided disome (di-ribosome) stalled on XBP1 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7QVP|1|S3|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7QVP_083 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0848

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7QVP|1|S3|A|40
7QVP|1|S3|G|41
7QVP|1|S3|A|42
7QVP|1|S3|U|43
7QVP|1|S3|U|44
7QVP|1|S3|A|45
7QVP|1|S3|A|46
7QVP|1|S3|G|47
*
7QVP|1|S3|C|479
7QVP|1|S3|G|480
7QVP|1|S3|C|481
7QVP|1|S3|G|482
7QVP|1|S3|C|483
7QVP|1|S3|A|484
7QVP|1|S3|A|485
7QVP|1|S3|A|486
7QVP|1|S3|U|487
*
7QVP|1|S3|A|512
7QVP|1|S3|G|513
7QVP|1|S3|U|514

Current chains

Chain S3

18S ribosomal RNA

Nearby chains

Chain RJ

40S ribosomal protein S9

Chain RX

40S ribosomal protein S23