J3_7R4X_007

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

7R4X|1|2|A|1679

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7R4X_007 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.0954

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7R4X|1|2|C|1218
7R4X|1|2|C|1219
7R4X|1|2|A|1220
7R4X|1|2|G|1221
*
7R4X|1|2|C|1645
7R4X|1|2|C|1646
7R4X|1|2|A|1647
7R4X|1|2|G|1648
7R4X|1|2|U|1649
7R4X|1|2|A|1650
7R4X|1|2|A|1651
*
7R4X|1|2|U|1673
7R4X|1|2|G|1674
7R4X|1|2|A|1675
7R4X|1|2|U|1676
7R4X|1|2|U|1677
7R4X|1|2|A2M|1678
7R4X|1|2|A|1679
7R4X|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28