J3_7R4X_020

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7R4X|1|2|G|1274, 7R4X|1|2|G|1507, 7R4X|1|2|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7R4X_020 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1049

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7R4X|1|2|OMC|1272
7R4X|1|2|C|1273
7R4X|1|2|G|1274
7R4X|1|2|G|1275
7R4X|1|2|A|1276
7R4X|1|2|C|1277
*
7R4X|1|2|G|1320
7R4X|1|2|G|1321
7R4X|1|2|G|1322
7R4X|1|2|U|1323
7R4X|1|2|G|1324
*
7R4X|1|2|U|1504
7R4X|1|2|U|1505
7R4X|1|2|A|1506
7R4X|1|2|G|1507
7R4X|1|2|A|1508
7R4X|1|2|U|1509
7R4X|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a