J3_7RQ8_063

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7RQ8|1|1a|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_063 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1748

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7RQ8|1|1a|C|990
7RQ8|1|1a|U|991
7RQ8|1|1a|U|992
7RQ8|1|1a|G|993
7RQ8|1|1a|A|994
7RQ8|1|1a|C|995
7RQ8|1|1a|A|996
7RQ8|1|1a|U|997
*
7RQ8|1|1a|A|1044
7RQ8|1|1a|C|1045
7RQ8|1|1a|A|1046
7RQ8|1|1a|G|1047
*
7RQ8|1|1a|C|1210
7RQ8|1|1a|U|1211
7RQ8|1|1a|U|1212
7RQ8|1|1a|A|1213
7RQ8|1|1a|C|1214
7RQ8|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z