J3_7RQ8_066

3D structure

PDB id

7RQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

7RQ8|1|2A|U|504, 7RQ8|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ8_066 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0603

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7RQ8|1|2A|G|30
7RQ8|1|2A|C|31
*
7RQ8|1|2A|G|474
7RQ8|1|2A|U|475
7RQ8|1|2A|G|476
7RQ8|1|2A|A|477
7RQ8|1|2A|A|478
7RQ8|1|2A|A|479
7RQ8|1|2A|A|480
7RQ8|1|2A|G|481
7RQ8|1|2A|A|482
7RQ8|1|2A|A|483
7RQ8|1|2A|C|484
*
7RQ8|1|2A|G|496
7RQ8|1|2A|A|497
7RQ8|1|2A|G|498
7RQ8|1|2A|U|499
7RQ8|1|2A|G|500
7RQ8|1|2A|A|501
7RQ8|1|2A|A|502
7RQ8|1|2A|A|503
7RQ8|1|2A|U|504
7RQ8|1|2A|A|505
7RQ8|1|2A|G|506
7RQ8|1|2A|A|507
7RQ8|1|2A|G|508
7RQ8|1|2A|C|509
7RQ8|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24