J3_7RQ9_056

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

7RQ9|1|1A|U|504, 7RQ9|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ9_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0541

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7RQ9|1|1A|G|30
7RQ9|1|1A|C|31
*
7RQ9|1|1A|G|474
7RQ9|1|1A|U|475
7RQ9|1|1A|G|476
7RQ9|1|1A|A|477
7RQ9|1|1A|A|478
7RQ9|1|1A|A|479
7RQ9|1|1A|A|480
7RQ9|1|1A|G|481
7RQ9|1|1A|A|482
7RQ9|1|1A|A|483
7RQ9|1|1A|C|484
*
7RQ9|1|1A|G|496
7RQ9|1|1A|A|497
7RQ9|1|1A|G|498
7RQ9|1|1A|U|499
7RQ9|1|1A|G|500
7RQ9|1|1A|A|501
7RQ9|1|1A|A|502
7RQ9|1|1A|A|503
7RQ9|1|1A|U|504
7RQ9|1|1A|A|505
7RQ9|1|1A|G|506
7RQ9|1|1A|A|507
7RQ9|1|1A|G|508
7RQ9|1|1A|C|509
7RQ9|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24