J3_7RQ9_067

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7RQ9|1|2A|C|34, 7RQ9|1|2A|U|448, 7RQ9|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQ9_067 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0933

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

7RQ9|1|2A|C|32
7RQ9|1|2A|U|33
7RQ9|1|2A|C|34
7RQ9|1|2A|G|35
*
7RQ9|1|2A|C|445
7RQ9|1|2A|G|446
7RQ9|1|2A|A|447
7RQ9|1|2A|U|448
7RQ9|1|2A|A|449
7RQ9|1|2A|G|450
7RQ9|1|2A|C|451
7RQ9|1|2A|G|452
7RQ9|1|2A|C|453
7RQ9|1|2A|A|454
7RQ9|1|2A|C|455
7RQ9|1|2A|C|456
7RQ9|1|2A|A|457
7RQ9|1|2A|G|458
7RQ9|1|2A|U|459
7RQ9|1|2A|A|460
7RQ9|1|2A|C|461
*
7RQ9|1|2A|G|468
7RQ9|1|2A|G|469
7RQ9|1|2A|A|470
7RQ9|1|2A|A|471
7RQ9|1|2A|A|472
7RQ9|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23