J3_7RQA_072

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7RQA|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQA_072 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1784

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7RQA|1|2a|C|990
7RQA|1|2a|U|991
7RQA|1|2a|U|992
7RQA|1|2a|G|993
7RQA|1|2a|A|994
7RQA|1|2a|C|995
7RQA|1|2a|A|996
7RQA|1|2a|U|997
*
7RQA|1|2a|A|1044
7RQA|1|2a|C|1045
7RQA|1|2a|A|1046
7RQA|1|2a|G|1047
*
7RQA|1|2a|C|1210
7RQA|1|2a|U|1211
7RQA|1|2a|U|1212
7RQA|1|2a|A|1213
7RQA|1|2a|C|1214
7RQA|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z