J3_7RQB_074

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7RQB|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQB_074 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.147

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7RQB|1|2a|C|990
7RQB|1|2a|U|991
7RQB|1|2a|U|992
7RQB|1|2a|G|993
7RQB|1|2a|A|994
7RQB|1|2a|C|995
7RQB|1|2a|A|996
7RQB|1|2a|U|997
*
7RQB|1|2a|A|1044
7RQB|1|2a|C|1045
7RQB|1|2a|A|1046
7RQB|1|2a|G|1047
*
7RQB|1|2a|C|1210
7RQB|1|2a|U|1211
7RQB|1|2a|U|1212
7RQB|1|2a|A|1213
7RQB|1|2a|C|1214
7RQB|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z