J3_7RQC_055

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7RQC|1|1A|U|448, 7RQC|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQC_055 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0481

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7RQC|1|1A|C|32
7RQC|1|1A|U|33
7RQC|1|1A|C|34
7RQC|1|1A|G|35
*
7RQC|1|1A|C|445
7RQC|1|1A|G|446
7RQC|1|1A|A|447
7RQC|1|1A|U|448
7RQC|1|1A|A|449
7RQC|1|1A|G|450
7RQC|1|1A|C|451
7RQC|1|1A|G|452
7RQC|1|1A|C|453
7RQC|1|1A|A|454
7RQC|1|1A|C|455
7RQC|1|1A|C|456
7RQC|1|1A|A|457
7RQC|1|1A|G|458
7RQC|1|1A|U|459
7RQC|1|1A|A|460
7RQC|1|1A|C|461
*
7RQC|1|1A|G|468
7RQC|1|1A|G|469
7RQC|1|1A|A|470
7RQC|1|1A|A|471
7RQC|1|1A|A|472
7RQC|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23