J3_7RQE_056

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

7RQE|1|1A|U|504, 7RQE|1|1A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RQE_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0459

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7RQE|1|1A|G|30
7RQE|1|1A|C|31
*
7RQE|1|1A|G|474
7RQE|1|1A|U|475
7RQE|1|1A|G|476
7RQE|1|1A|A|477
7RQE|1|1A|A|478
7RQE|1|1A|A|479
7RQE|1|1A|A|480
7RQE|1|1A|G|481
7RQE|1|1A|A|482
7RQE|1|1A|A|483
7RQE|1|1A|C|484
*
7RQE|1|1A|G|496
7RQE|1|1A|A|497
7RQE|1|1A|G|498
7RQE|1|1A|U|499
7RQE|1|1A|G|500
7RQE|1|1A|A|501
7RQE|1|1A|A|502
7RQE|1|1A|A|503
7RQE|1|1A|U|504
7RQE|1|1A|A|505
7RQE|1|1A|G|506
7RQE|1|1A|A|507
7RQE|1|1A|G|508
7RQE|1|1A|C|509
7RQE|1|1A|C|510

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20

Chain 1W

50S ribosomal protein L22

Chain 1Y

50S ribosomal protein L24