J3_7RR5_004

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7RR5|1|C1|A|817, 7RR5|1|C1|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RR5_004 not in the Motif Atlas

Homologous match to J3_5TBW_004

Geometric discrepancy: 0.1049

The information below is about J3_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7RR5|1|C1|U|814
7RR5|1|C1|G|815
7RR5|1|C1|A|816
7RR5|1|C1|A|817
7RR5|1|C1|C|818
7RR5|1|C1|U|819
7RR5|1|C1|A|820
*
7RR5|1|C1|U|905
7RR5|1|C1|A|906
7RR5|1|C1|G|907
*
7RR5|1|C1|C|923
7RR5|1|C1|G|924
7RR5|1|C1|A|925
7RR5|1|C1|A|926

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-B

Chain LN

60S ribosomal protein L15-A

Chain Lj

Ribosomal protein L37