J3_7RR5_011

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CA*UAACU*AG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RR5_011 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.1576

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

7RR5|1|C1|C|1631
7RR5|1|C1|A|1632
*
7RR5|1|C1|U|1641
7RR5|1|C1|A|1642
7RR5|1|C1|A|1643
7RR5|1|C1|C|1644
7RR5|1|C1|U|1645
*
7RR5|1|C1|A|1810
7RR5|1|C1|G|1811

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LZ

60S ribosomal protein L27

Chain Lg

60S ribosomal protein L34-A

Chain Lk

RPL38 isoform 1