J3_7RR5_022

3D structure

PDB id

7RR5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ribosomal complex bound with Rbg1/Tma46

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7RR5_022 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2138

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7RR5|1|C2|C|1161
7RR5|1|C2|C|1162
7RR5|1|C2|A|1163
7RR5|1|C2|G|1164
*
7RR5|1|C2|C|1581
7RR5|1|C2|U|1582
7RR5|1|C2|A|1583
7RR5|1|C2|G|1584
7RR5|1|C2|U|1585
7RR5|1|C2|A|1586
7RR5|1|C2|A|1587
*
7RR5|1|C2|U|1609
7RR5|1|C2|G|1610
7RR5|1|C2|A|1611
7RR5|1|C2|U|1612
7RR5|1|C2|U|1613
7RR5|1|C2|A|1614
7RR5|1|C2|C|1615
7RR5|1|C2|G|1616

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SF

Rps5p

Chain SQ

40S ribosomal protein S16-A

Chain Sc

RPS28A isoform 1