J3_7RR5_038
3D structure
- PDB id
- 7RR5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ribosomal complex bound with Rbg1/Tma46
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 7RR5|1|C2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7RR5_038 not in the Motif Atlas
- Homologous match to J3_8C3A_083
- Geometric discrepancy: 0.11
- The information below is about J3_8C3A_083
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.2
- Basepair signature
- cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7RR5|1|C2|A|41
7RR5|1|C2|G|42
7RR5|1|C2|A|43
7RR5|1|C2|U|44
7RR5|1|C2|U|45
7RR5|1|C2|A|46
7RR5|1|C2|A|47
7RR5|1|C2|G|48
*
7RR5|1|C2|C|431
7RR5|1|C2|G|432
7RR5|1|C2|C|433
7RR5|1|C2|G|434
7RR5|1|C2|C|435
7RR5|1|C2|A|436
7RR5|1|C2|A|437
7RR5|1|C2|A|438
7RR5|1|C2|U|439
*
7RR5|1|C2|A|464
7RR5|1|C2|G|465
7RR5|1|C2|U|466
Current chains
- Chain C2
- 18S rRNA
Nearby chains
- Chain R
- Ribosome-interacting GTPase 1
- Chain SJ
- 40S ribosomal protein S9-A
- Chain SX
- 40S ribosomal protein S23
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